Monday, November 13, 2017

TDWG 2017 Annual Conference: Data Integration in a Big Data Universe: Associating Occurrences with Genes, Phenotypes, and Environments

TDWG 2017 Annual Conference: Data Integration in a Big Data Universe: Associating Occurrences with Genes, Phenotypes, and Environments



The Biodiversity Heritage Library is an institutional member of TDWG. TDWG was formed to:
establish international collaboration among biological database projects. TDWG promoted the wider and more effective dissemination of information about the World's heritage of biological organisms for the benefit of the world at large. Biodiversity Information Standards (TDWG) now focuses on the development of standards for the exchange of biological/biodiversity data.

The TDWG 2017 Annual Conference, the theme of which was "Data Integration in a Big Data Universe: Associating Occurrences with Genes, Phenotypes, and Environments" (see the full program here),  provides the opportunity for bioinformatics professionals to meet and exchange a wide variety of ideas. Held in Ottawa, Ontario, the conference was hosted by Agriculture and Agri-Food Canada and the Canadian Museum of Nature (a BHL Affiliate).

This year, The Biodiversity Heritage Library organized a symposium, "500 Years of Big Data from the Biodiversity Heritage Library" organized by BHL Program Director Martin R. Kalfatovic and BHL Program Manager Carolyn A. Sheffield. In addition to the BHL symposium, BHL web developer Mike Lichtenberg participated in the symposium, "Using Big Data Techniques to Cross Dataset Boundaries - Integration and Analysis of Multiple Datasets" organized by Kalfatovic, Matthew Collins, and Robert Guralnick.

The Biodiversity Heritage Library staff had a significant presence at the TDWG 2017 Annual Conference including organizing two symposium (details below).

BHL Symposium (abstracts found in the links below)

From left: Lewis, Orrell, Mozzherin, Mika, Sheffield

Symposium: Using Big Data Techniques to Cross Dataset Boundaries - Integration and Analysis of Multiple Datasets


Excursion

TDWG also offered the opportunity for excursions. The Canadian Museum of Nature (CMN) provided an amazing tour of their collections facilities located just outside the city. The CMN library is also located at this facility and it was great to meet with the library staff and see their collections.








Bracing for Impact: Smithsonian Digitization Fair 2017

Bracing for Impact: Smithsonian Digitization Fair 2017

The Smithsonian Institution's Digitization Program Office organized the Institution's Digitization Fair on 18-19 October 2017 in the S. Dillon Ripley Center in Washington, DC. The theme of this year's fair was "Bracing For Impact". The fair explored how digitized collections can affect lives in significant and measurable ways by:

  • Showcasing examples where digitized collections have initiated creativity, innovation and change in some area of human endeavor;
  • Exploring ways museums, archives and libraries can maximize the impact of their digitized collections; and
  • Investigating ways museums, archives and libraries can measure the impact of their digitized collections

I participated on day two during the panel, Facilitating Impact: Open Access. My talk, “'The Gift of Time': Impact through Open: The Biodiversity Heritage Library" spoke to the importance of providing open access to scientific and cultural property when not impeded by legitimate legal or other concerns.


Dr. David Skorton, Secretary, Smithsonian Institution, provided a welcome to participants and attendees and was followed by an introduction by Diane Zorich, Director, Digitization Program Office. The first day opened with a keynote by Brian Mathews, Vice President, Platform Engineering, Autodesk, Inc. and was followed by a responder panel composed of:

  • Moderator: Victoria Portway, Head of Digital Experiences, National Air & Space Museum, Smithsonian Institution
  • Desi Gonzalez, Manager of Digital Engagement, The Andy Warhol Museum
  • John Hessler, Curator of the Jay I. Kislak Collection of the Archaeology & History of the Early Americas, Geography and Map Division, Library of Congress

The remainder of the first day was comprised of the following panels:

Panel One: Showcasing Impact in Art, Education and Research

  • Moderator: Effie Kapsalis, Chief of Content and Communications Strategy, Smithsonian Institution Archives
  • Corey Kilbane, Chemistry Teacher and Science Innovation Coach, William Penn Charter School
  • Alan Newman, Chief, Digital Media, National Gallery of Art
  • Michael Weinberg, General Counsel, Shapeways


Panel Two: Showcasing Impact with Emerging Platforms

  • Moderator: Elizabeth Neely, Senior Director Integrated Content, American Alliance of Museums
  • Paul Frandsen, Research Data Scientist, Biodiversity, Office of the Chief Information Officer, Smithsonian Institution
  • Meghan McCarthy, Project Lead, NIH 3D Print Exchange
  • Rolf Mueller, Associate Professor, Department of Mechanical Engineering, Virginia Tech


Panel Three: Manufacturing Impact

  • Moderator: Shannon Perich, Curator, Photographs, National Museum of American History, Smithsonian Institution
  • Josh Hadro, Deputy Director, New York Public Library Labs
  • Leah Weinryb Grohsgal, Senior Program Officer and National Digital Newspaper Program Coordinator, National Endowment for the Humanities
  • Gerald "Stinger" Guala, Branch Chief Eco-Science Synthesis, Director Integrated Taxonomic Information System, United States Geological Survey

Panel Four: Measuring Impact

  • Moderator: Stephanie Norby, Director, Smithsonian Center for Learning and Digital Access
  • Ricardo Punzalan, Assistant Professor, College of Information Studies, University of Maryland
  • Madlyn Runburg, Director of Education Initiatives, Natural History Museum of Utah
  • Harry Verwayen, Deputy Director, Europeana

The day closed with a Closing Keynote Address: Open Access Oceans: Framing Stories for Impact by Erika Woolsey, CEO & Co-Founder, The Hydrous

The second day started with a keynote by Dr. Ian Owens, Director of Science, Natural History Museum, London. Dr. Owens, in his talk, "The New Enlightenment," spoke on the importance of natural history collections and how digitization will assist and change the ways collections are used. He also pointed out the importance of the Biodiversity Heritage Library as a component of these collections. A responder panel built on Owens talk:

  • Moderator: Maureen Kearney,  Associate Director for Science, National Museum of Natural History, Smithsonian Institution
  • Catherine Eagleton, Associate Director for Curatorial Affairs, National Museum of American History, Smithsonian Institution
  • Scott Miller, Deputy Under Secretary for Collections & Interdisciplinary Support, Smithsonian Institution

This was followed by panels on the following topics:

Panel One: Showcasing Impact

  • Moderator: Mark Kornmann, Director, Office of Public Engagement, National Air & Space Museum, Smithsonian Institution
  • Laura Coyle, Head of Cataloging and Digitization, National Museum of African American History & Culture, Smithsonian Institution
  • Karen Lemmey, Curator of Sculpture, Smithsonian American Art Museum, Smithsonian Institution
  • Stephanie Norby, Director, Smithsonian Center for Learning and Digital Access
  • Matilda McQuaid, Museum Curator, Textiles, Cooper Hewitt Smithsonian Design Museum

Panel Two: Facilitating Impact: Open Access

  • Moderator: Anne Collins Goodyear, Co-Director, Bowdoin College Museum of Art
  • Rachel Allen, Deputy Director, Smithsonian American Art Museum, Smithsonian Institution
  • Lauryn Guttenplan, Associate General Counsel, Smithsonian Institution
  • Martin Kalfatovic, Associate Director, Smithsonian Libraries; Program Director Biodiversity Heritage Library, Smithsonian Institution

Panel Three: Resourcing for Digitization Impact

  • Moderator: Al Horvath, Under Secretary for Finance and Administration, Smithsonian Institution
  • Meghan Ferriter, National Digital Initiatives, Library of Congress
  • Robert Horton, Asst. Director, Collections & Archives, National Museum of American History, Smithsonian Institution
  • Jaap Otte, Senior Gift Officer, Smithsonian Institution
  • William Tompkins, Director, National Collections Program, Smithsonian Institution

Friday, November 10, 2017

Smithsonian | Leibniz Association Meetings, October 2017

Smithsonian Secretary David Skorton (r) and 
Leibniz Association President Matthias Kleiner (l)
Nancy E. Gwinn and Martin R. Kalfatovic attended a two day meeting, "Aim, Scope, and Challenges of Research Museums: An exchange between the Smithsonian Institution and the Leibniz Association " on 30-31 October. Anne Evenhaugen also participated in the meetings as part of her Emerging Leadership Development Program. Organized by Scott Miller, Deputy Undersecretary for Collections and Interdisciplinary Support (DUSCIS), the meeting brought together a number of Smithsonian staff and representatives from a number of the 91 institutional members of the Leibniz Association. The Leibniz Association is a union of German non-university research institutes from various branches of study and has a number of similarities to the Smithsonian Institution.

The meeting opened with a discussion between Smithsonian Secretary David Skorton and
Leibniz Association President Matthias Kleiner. The two discussed areas of overlap, common goals, and areas of collaboration between the two organizations. The first session was "Understanding of Research Museums at Smithsonian and Leibniz". Participants introduced themselves and Scott Miller provided an overview of the Smithsonian while Sunhild Kleingärtner (German Maritime Museum) did the same for the Leibniz Association.

There followed a number of focus sessions:

Focus: Evaluation Systems and Metrics
  • Smithsonian Speakers: Martin Kalfatovic (Bibliometrics, SRO), Amy Marino (Metrics and dashboards, Smithsonian Profiles)
  • Leibniz: Britta Horstmann (Leibniz Head Office)
Stephanie Norby, Smithsonian Education
Focus: Collections 
  • Smithsonian Speakers: Bill Tompkins (collections space), Diane Zorich (mass digitization), Martin Kalfatovic (Biodiversity Heritage Library)
  • Leibniz: Christoph Häuser (Leibniz-MfN) (German national digitization program); Helmut Trischler (Leibniz-DM)
Focus: Exhibitions
  • Smithsonian Speakers: Rex Ellis (National Museum of African American History and Culture)
  • Leibniz: Ruth Schilling (Leibniz-DSM); Daniel Hess (Leibniz-GNM)
There followed a discussion: Discussion / Questions: What status does research have in your exhibitions? How do research and exhibitions interact? What social role and responsibility do museums have with regard to a culture of remembrance (Erinnerungskultur)?

Focus: Research Themes for Potential Collaboration 
  • Smithsonian speakers: Stephanie Norby and Carol O’Donnell (education), Bob Koestler and Paula DePriest (materials conservation)
  • Leibniz: Alexandra Busch (Leibniz-RGZM, interdisciplinary research, e.g., Educational Research, Biodiversity, Cultural Heritage as a Resource), Stefan Brüggerhoff (Leibniz-DBM, collection-based research, e.g. Material Conservation Research, Historical Authenticity)

Summary and Concluding Remarks
The meetings concluded with a session on looking at further collaborations and next steps. Smithsonian Provost John Davis joined the group for this portion of the discussion. There was a discussion about possible collaborative projects around the German+American experience. The planned exhibition research from SAAM around Alexander von Humboldt.

Other topics for further conversations included education, material conservation, audience metrics, interactions of collections and research, staff exchange (specifically on the technical, digitization, and administrative), funding and business models, initiate a Smithsonian/Leibniz communication platform

* * * * *

Leibniz Association participating organizations:
  • Leibniz Association Head Office and Central Staff
  • Leibniz Association Senate 
  • Federal Ministry of Education and Research
  • Ministry of Culture and Science of the State of North Rhine-Westphalia
  • Deutsche Forschungsgemeinschaft (DFG) 
  • Deutsches Museum, Munich
  • Museum für Naturkunde Berlin
  • Senckenberg Gesellschaft für Naturforschung
  • Zoological Research Museum
  • German Maritime Museum
  • ermanisches National Museum
  • Museum für Naturkunde
  • Römisch-Germanisches Zentralmuseum 
Alexandra Busch, Director for Research
Römisch-Germanisches Zentralmuseum
* * * * *

The Smithsonian Research Online and Biodiversity Heritage Library presentations are available here:

Saturday, November 04, 2017

24th meeting of the Global Biodiversity Information Facility (GBIF) Governing Board

BHL Head of Delegation, Constance Rinaldo
The 24th meeting of the Global Biodiversity Information Facility (GBIF) Governing Board and associated events were held its annual meeting in Helsinki, Finland, 24-29 September. The Biodiversity Heritage Library (BHL) was represented at both the 14th GBIF Nodes Meeting (24-25 September 2017, by BHL Program Director, Martin R. Kalfatovic) and the Governing Board Meeting (26-27 September 2017, by BHL Chair, Constance Rinaldo).

14th Global Nodes Meeting

At the Nodes meeting, the delegates were welcomed by Finnish GBIF Nodes Manager, Tapani Lahti. Following this, André Heughebaert, Chair, Nodes Committee, provided an introduction to the structure of the meeting and outlined the key goals:
  • Share information on progress in the nodes
  • Establish new collaboration models
  • Set priorities for the next 2 years
Heughebaert also outlined some elements of the GBIF 2018 Work Programme and noted that there are plans to include regional meetings as in the past. The GBIF Secretariat provide an overview of their activities, led by Tim Hirsch (Deputy Director, GBIF Secretariat). Hirsch's talk, "GBIF International landscape & New regions" was an overview of the GBIF international landscape, including participation by area and how different metrics can be used to measure participation and/or coverage of biodiversity data in GBIF. Some key things that GBIF is addressing are:
  • Address major geospacial gaps
  • Mobilize sampling-event data
  • Digitize natural history collections
Areas are being focused on include the Caribbean (formation of an Atlas of Living Caribbean), Pacific Islands (creating new participant options, including a meeting in Samoa).

Hirsch also noted that GBIF is the key reporting structure for Aichi Target 19  f the Convention on Biological Diversity. He also discussed GBIF's relation to  Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) and how GBIF can engage in filling gaps in knowledge through data mobilization priorities.

Other Secretariat updates included:
  • Capacity Enhancement Support Programme (CESP) / Aisha Lolila Jensen (Program Officer for Participation and Engagement, GBIF Secretariat)
  • Biodiversity Information for Development (BID) / Laura Russell (Program Officer for Participation and Engagement, GBIF Secretariat)
  • Biodiversity Fund for Asia (BIFA) / Maofang Luo (Visiting Scientist from the Chinese Academy of Sciences, GBIF Secretariat)
  • IPT GBIF API and other tools / Laura Russell  (Program Officer for Participation and Engagement, GBIF Secretariat)
  • Presentation of the new GBIF Portal / Morten Høfft & Thomas S. Jeppesen (Web Developers, GBIF Secretariat)
Swan wings
The second session were short talks by members of the GBIF node community and included:
  • Description of the Antarctic Thematic GBIF Node, Strength & Weaknesses / Anton Van de Putte, Node manager, Scientific Committee on Antarctic Research (SCAR) 
  • SiB Colombia role as a referent in the Latino American initiatives through GBIF (e.g. workshops, projects, mentoring) / Leonardo Buitrago, Node manager, Colombia 
  • Data management: Stable identifiers for collection specimens: What could the Nodes do to spread the use of this practice? / Walter Berendsohn & Anton Güntsch, Node manager, Germany 
  • Olaf Banki on the @catalogueoflife CoL+ which provides extended taxonomic catalogue & other goals other partners incl @NLBIF @GBIF @Naturalis_Sci Species2000 ITIS 
  • GBIF Norway: Software tools for online citizen science volunteer digitization of museum herbaria collections, https://data.gbif.no/dugnad  By Christian Svindseth, Node staff, Norway
  • GBIF Norway: Terms selection tool for data publishers, https://data.gbif.no/dwcexcel By Christian Svindseth, Node staff, Norway 
A tour of the Finnish Museum of Natural History's herbarium scanning project was also provided at the lunch break. The day concluded with a reception at the Finnish Museum of Natural History. Delegates were also privileged to get a behind-the-scenes tour of the museum's collections areas.

Reception with dinosaurs

Global Nodes meeting group photo
(Photo by Anne Mette Nielsen, CC BY-NC 4.0)

* * * * * 

24th GBIF Governing Board Meeting

GBIF Governing Board Chair Peter Schalk (Naturalis Biodiversity Center, Leiden) and Donald Hobern (GBIF Executive Secretary) led the meeting and provided an overview of the past year. There was also a discussion of the GBIF Strategic Plan Goals and Work Programme updates. The plan goals were discussed in detail:
  • Strategic Plan Goal 1 – Empower Global Network
    “Ensure that governments, researchers and users are equipped and supported to share, improve and use data through the GBIF network, regardless of geography, language or institutional affiliation.” 
  • Strategic Plan Goal 2 – Enhance Biodiversity Information Infrastructure
    “Provide leadership, expertise and tools to support the integration of all biodiversity information as an interconnected digital knowledgebase.” 
  • Strategic Plan Goal 3 – Fill Data Gaps
    “Prioritize and promote mobilization of new data resources which combine with existing resources to maximize the coverage, completeness and resolution of GBIF data, particularly with respect to taxonomy, geography and time.” 
  • Strategic Plan Goal 4 – Improve Data Quality
    “Ensure that all data within the GBIF network are of the highest-possible quality and associated with clear indicators enabling users to assess their origin, relevance and usefulness for any application.” 
  • Strategic Plan Goal 5 – Deliver Relevant Data
    Ensure that GBIF delivers data in the form and completeness required to meet the highest priority needs of science and, through science, society.” 
The meeting also presented the winners of the 2017 Young Researchers Award:
In official business, the various GBIF Committee chairs (Science, Nodes, Budget) all reported. Hobern also presented the 2018 budget and work programme. Ireland was selected as the host for the 2018 GBIF 25th meeting of the Global Biodiversity Information Facility (GBIF) Governing Board and Governing Board positions were voted on. Results of the elections were:
  • Chair, Governing Board: Tanya Abrahamse, South Africa
  • 2nd Vice Chair, Governing Board: Mark Graham, Canada
  • Chair, Budget Committee: Peter Schalk, Netherlands
  • 1st Vice-Chair, Budget Committee: Liam Lysaght, Ireland
  • 2nd Vice-Chair, Budget Committee: Joanne Daly, Australia
  • Chair, Science Committee: Thomas M. Orrell, United States
  • 2nd Vice-Chair, Science Committee: Anders G. Finstad, Norway
  • 3rd Vice-Chair, Science Committee: Philippe Grandcolas, France

Governing Board meeting group photo
(Photo by Linda Tammisto, CC0 2017)
* * * * * 

Finnish National Seminar

Professor Leif Schulman
All delegates and other guests were invited to the Finish National Seminar, "Finnish Biodiversity Information for the Benefit of Society".  The national seminar is a full-day event with talks from invited international and Finnish guest speakers including researchers of various fields as well as representatives of the natural resources administration. The programme gives broad insight into the various uses of openly available biodiversity data in research, governance, and teaching, and introduces the newly established Finnish Biodiversity Information Facility (FinBIF).

Professor Leif Schulman, Director of the Finnish Museum of Natural History (and GBIF Head of Delegation for Finland) provided a brilliant opening to the Seminar (which was held in the beautiful Great Hall of the University of Helsinki) by pacing four meters across the stage and noting that it was this distance that birds in Finland are moving north due to climate change. Schulman also introduced Finnish Member of Parliment Ville Niinistö (Minister of the Environment in 2011-2014, led to the funding of FinBIF) who provided a governmental perspective on biodiversity.

Executive Secretary Donald Hobern
GBIF Executive Secretary Donald Hobern provided an overview of GBIF's activities and goals and was followed by FinBIF Manager Kari Lahti who contextualized this work within the Finnish context. Dr. Vincent Smith (Head of Diversity & Informatics Division, Natural History Museum, London), provided a keynote talk, "The Digital Transformation of Biodiversity Institutions - a Changing Intellectual Business Model".

Researchers from across Finland then provided a series of talks that delved deeper into programs and investigations that FinBIF, GBIF, and other global biodiversity research organizations are facilitating. The talks included:
  • Research Director Atte Moilanen (University of Helsinki & FinBIF)
  • Associate Professor Tuuli Toivonen (University of Helsinki)
  • University Researcher Sami Aikio (University of Oulu)
  • Post Doc Researcher Andrea Santangeli (Finnish Museum of Natural History)
  • Research Director Ilari Sääksjärvi (University of Turku)
  • Senior Curator Marko Mutanen (University of Oulu Biodiversity Unit)
  • Professor Jouko Rikkinen (Finnish Museum of Natural History & Faculty of Biosciences, University of Helsinki)
  • Ministerial Adviser Johanna Niemivuo-Lahti , Ministry of Agriculture and Forestry
  • Dr. Aino Juslén , Unit Director at the Finnish Museum of Natural History


* * * * * 

Other Meetings

Xu & Kalfatovic
The meetings also provided BHL staff to meet with a number of our partners. Dr. Zheping Xu (BHL China) Patricia Koleff (BHL México). Discussions with Michelle Price (Conservatoire et Jardin botaniques de la Ville de Genève) and Chair of Consortium of European Taxonomic Facilities (CETAF AISBL) provided an opportunity to explore possible collaborations.













Rinaldo, Koleff, Kalfatovic
Rinaldo and Kalfatovic were also able to spend time with outgoing GBIF Science Committee Chair and BHL power user Rod Page to discuss ongoing work with the BHL portal. The GBIF meetings also provided a good opportunity to catch up with staff from iDigBio, including Deb Paul (Digitization and Technology Specialist).

* * * * * 

Biodiversity Excursions

Vallisaari and Suomenlinna
Vallisaari is just 20 minutes by boat from the Market Square in Helsinki. The island was opened for the public last year – before that it was decades abandoned and the nature took its place. Vallisaari is the most diverse nature destination in the metropolitan area. The island’s fortifications, buildings, and a record-breaking range of species tell a tale of coexistence between humans and wild nature. The other attraction, fortress of Suomenlinna is one of Finland’s UNESCO World Heritage Sites. Suomenlinna was built during the Swedish era as a maritime fortress and a base for the Archipelago Fleet.

Excursion to Vallisaari

Nuuksio National Park
The Nuuksio National Park is located in the border of the oak forest zone and the southern boreal forest zone. The landscape is dominated by valleys and gorges formed by the Ice Age, and barren rocky hills covered by lichen and sparse pine forest. At some places the hills reach the height of 110 metres above the sea level.

* * * * * 

Other Resources


Amanita muscaria, Vallisaari, Finland

Saturday, August 05, 2017

Report on the XIX International Botanical Congress, Shenzhen, China, July 2017

XIX IBC 2017
Report on the XIX International Botanical Congress, Shenzhen, China, July 2017

Along with BHL Program Manager Carolyn Sheffield, I represented BHL as a delegate to the XIX International Botanical Congress in Shenzhen, China. Held during the week of 24-28 July 2017, the Congress (which is held every five years) drew over 6,000 botanists from around the world.

The Congress provided an excellent opportunity to catch up with colleagues from around the world and learn about some of the latest botanical research.

Smithsonian botany colleagues at the Congress included Jun Wen (one of the Congress organizers), John Kress (who gave a keynote address, see below), Larry Dorr, Conrad Labandeira, Vicki Funk, and maybe more that I didn't run into.

Sandra Knapp
SHENZHEN DECLARATION AND PUBLIC TALKS
The program was divided into plenary talks, keynote talks, general symposia, and public lectures (see abstracts for all here). The Congress opened with a public lecture by Peter H. Raven, President Emeritus of the Missouri Botanical Garden. Raven's talk, "Saving Plants to Save Ourselves: The Shenzhen Declaration" was on the public announcement of the Shenzhen Declaration on Plant Sciences. Authored by fourteen illustrious botanists that formed the Shenzhen Declaration Drafting Committee, the declaration is an important statement on the role of plant science in a changing world. The declaration opens with:

"Actions and priorities to connect the global community of plant scientists with the world’s changing societies are today more imperative than ever. Environmental degradation, unsustainable resource use, and biodiversity loss all require integrated, collaborative solutions."

IBC logos on Shenzhen skyline
Noting the changing world we inhabit, the change evidenced by increased species extinction, global climate change, rapid changes in the practice of plant science, and refactoring of the world's economy, the declaration outlines seven priorities for strategic action in the plant sciences. These priorities will "allow society, with the help of science, to mitigate impacts of human activities on plant species, habitats, and distributions, and to approach formation of a sustainable world for ourselves and those who follow us." These seven priorities are:
  • To become responsible scientists and research communities who pursue plant sciences in the context of a changing world. 
  • To enhance support for the plant sciences to achieve global sustainability.
  • To cooperate and integrate across nations and regions and to work together across disciplines and cultures to address common goals. 
  • To build and use new technologies and big data platforms to increase exploration and understanding of nature.
  • To accelerate the inventory of life on Earth for the wise use of nature and the benefit of humankind. 
  • To value, document, and protect indigenous, traditional, and local knowledge about plants and nature.
  • To engage the power of the public with the power of plants through greater participation and outreach, innovative education, and citizen science.
Raven's inspiring talk on the Declaration, was a brilliant opening to the Congress (and touched upon by nearly all speakers for the remainder of the Congress) and concluded with a rousing call to action: "Let us make this Congress a time of commitment to do better and resolutely seek a sound and sustainable future for all people."

Another public lecture of note was by Sandra Knapp (Natural History Museum, London). Knapp's talk, "People and Plants -- the Unbreakable Bond". Knapp noted "Plants form the scaffold for Earth’s green ecosystems, but they are also essential for human survival. Plants provide most of the food we eat (directly or indirectly), our medicines, clothes, buildings, and even the air we breathe; they also beautify our daily lives." Knapp further detailed the importance of plants to humans and then pivoted to, ask "So we need plants, but do they need us?" Knapp's answer was yes:
"In this time of increasing human impact on plants, animals and natural habitats, our actions can make a big difference in whether plants are a part of an ecological civilization for the future. Plants do in fact need us - they need us to study and use them responsibly, both as scientists and as members of human societies."
W. John Kress
KEYNOTE AND PLENARY TALKS
The Congress presented a number of excellent keynote and plenary talks. Of special note were the following:

"Tropical Plant-Animal Interactions: Coevolution in the Anthropocene" by W. John Kress (Smithsonian Institution, National Museum of Natural History). Kress illustrated his talk with research on the interaction of beetles, humming birds, and Zingiberales (including bananas, birds-of-paradise, heliconias, gingers, and prayer plants). Kress concluded with "The geographic mosaic of these relationships across tropical islands, fragmented landscapes, and elevational gradients suggests that human-caused habitat alterations, biological invasions, and climate change may significantly modify and disrupt through time and space the historical patterns of ecological interactions. The future of today’s biological complexity in the Age of Humans, in the Anthropocene, remains to be determined."

Peter Wyse Jackson
"International developments and responsibilities for the botanical community in plant conservation" by Peter Wyse Jackson (Missouri Botanical Garden). Wyse Jackson provided a high level overview of the importance of the Global Strategy for Plant Conservation (GSPC), part of the United Nations Convention on Biological Diversity, and showed how individual institutions can help achieve the 2020 targets of the GSPC. He specifically noted how the Missouri Botanical Garden is working in the areas of conservation biology, ecological restoration, community conservation and education programs, horticulture and ex situ conservation towards this end. The World Flora Online project, based at the Missouri Botanical Garden and with partners worldwide and which will be previewed at the Congress is a first target of the GSPC.

Keping Ma
"Mapping Asia Plants" by Keping Ma (Institute of Botany, Chinese Academy of Sciences). Ma provided an excellent overview of a number of resources that are helping to document plant life in Asia. Ma commented "Because of the huge population and rapid growth of economy, biodiversity including plants are being seriously threatened in Asia." He also detailed  the work of the Asia Biodiversity Conservation and Databases Network (ABCDNet)  project entitled Mapping Asia Plants for cataloguing species of plants and collecting distribution data. The importance of the Biodiversity Heritage Library China (BHL China) in providing access to literature was noted.

Jun Wen
"Developing integrative systematics in the informatics and genomic era" by Jun Wen (Smithsonian Institution, National Museum of Natural History). "Systematics is the science of discovering, organizing and interpreting the diversity of all living organisms on Earth. Recent developments in genomics and biodiversity informatics are transforming systematics and have opened up many new opportunities." With that statement, Wen outlined the opportunities of big data, digitization, and genomics in developing the tree of life. The wider importance of this work was driven home as Wen noted "integrative systematics must proactively educate the public and policy makers on the importance of systematics and collections in the biodiversity crisis of the Anthropocene."

Kevin Thiele
"Thinking through the e- in e-Floras; or, Floras old, new, and not-yet" by Kevin Thiele (Western Australian Herbarium). Thiele delivered an provocative talk that touched upon the very core of how plant scientists do their work and to what level much of the scientific output is wedded to 19th century methods of dissemination while we are living well into the 21st century. He illustrated this with how many "e-floras" simply reproduce print methodologies. He challenged the audience to consider, "If modern taxonomy and systematics were invented, or re-invented, now (in the age of the internet, social media, citizen science and the block chain), rather than in the 18th Century, would we do it all differently?"

In perhaps the most inspirational talk of the Congress, Stephen Blackmore (Royal Botanic Garden Edinburgh) spoke on the seemingly simple topic, "Saving Plants".  Blackmore drew on his personal experience in Pearl River Delta area to tie together the different sectors and stakeholders that are needed to create a world where plants, and by extension, humans, can both survive and thrive. Blackmore focused on how the contributions of botanic gardens, arboreta, seed banks and other collections of living and preserved plants to achieve the goal of saving plants. Blackmore ended on the note that "we will need to work closely together if we are to succeed in passing on the Earth’s rich, green inheritance to future generations."

Stephen Blackmore
BIODIVERSITY HERITAGE LIBRARY SYMPOSIUM
For the Congress, I, along with Carolyn Sheffield, organized a general symposium, "The Biodiversity Heritage Library: Empowering Discovery through Free Access to Biodiversity Knowledge" with colleagues global partners of the Biodiversity Heritage Library. Presenters at the symposium were:

From left: Ulate, Carag, Xu, Karim, Sheffield

Shenzhen
OTHER SYMPOSIA
Many familiar colleagues participated in the General Symposium "Green digitization: online botanical collections data answering real-world questions" organized by Shelley A James (Florida Museum of Natural History, USA) & Gil Nelson (Florida State University, USA). Talks at the symposium included:
  • Rebranding botanical collections: Global societal and biodiversity data needs for novel research  | Shelley James 
  • Invasive or Not? A collection-based investigation of a historically unseen, persistent green algal bloom on Pacific coral reefs | Tom Schils [unable to present]
  • Current status and the applications of online botanical collection data in China | Zheping Xu
  • Virtual Herbaria tracking usage and benefits for biological collections an example from Australasia | David Cantrill 
  • Developing standards for scoring phenology from herbarium specimens | Jenn Yost
  • From field collections to digital data: A workflow and digitization pipeline for reconstruction of a fossil flora | Dori Contreras [delivered in abstentia]
OTHER ACTIVITIES
Artron (photo by Ivan Lee @ Artron)
A number of excursions were organized for delegate. I participated in one excursion that highlighted the hi-tech industry that has led to Shenzhen growing from a small fishing village to a world-class city with a population of 15 million in less than 40 years. The first stop was at UBTECH, a robotics start-up company that markets a robot that can interact with digital assistants (such as the Amazon Alexa). The next stop was Nirvana for this former art librarian. Artron, is a world-class printer of art books that produces art books and catalogs for the museums and galleries of the world. We visited their library and exhibition spaces. The focal point of the facility was the "Wall of Art Books." Over 150,000 art books are on display in a four story space (that has to be experience to be believed). All books are available to view by members of the Artron private library. We visited the private library, consisting of 20 themed rooms (e.g. "Japanese Vintage Books" and "The Business of Art") as well as the main reading room with a touch pad catalog where readers can page books (after pre-viewing full-text digitized versions). After leaving the Artron facility, I couldn't help but imagine this is how the brick and mortar library of the future will look.

My second excursion was more on a botanical point. The Fairy Lake Botanical Garden is a 546 ha botanical garden which compares favorably with the great gardens of the world. First stop was the shade garden and butterfly pavilion. From there. down to the Fairy Lake and the palm area. We had the opportunity to visit the National Cycad Conservation Center. Fabulous collection of cycads from around the world and also a fossil collection. The Fairy Lake Botanical Garden also has a spectacular petrified forest area. Huge amounts of petrified wood that have been "planted" to look like a forest. Quite spectacular. Also, something that won't be seen again since export of petrified wood is now controlled. Also stopped in at the Shenzhen Paleontological Museum (some dinosaurs and nice trilobites, my favorite extinct invertebrate!).

The Congress featured a mid-week Gala that provided an opportunity to recognize the work of organizers and the program committee. The Gala also showcased a wide variety of Chinese entertainment that ranged from classical instrumentalists, to dancers and acrobats, to a Chinese doo-wop group. The accompanying buffet featured a number of tasty offerings.

With Sandra Knapp and Peter Raven

IN SUMMARY
The XIX International Botanical Congress was a unique opportunity for Smithsonian Libraries and the Biodiversity Heritage Library to meet with colleagues from around the world (and from down the hall) to discuss important issues related to plant science and how we, as librarians, can work with plant scientists to accelerate their work and to achieve the aspirational goals as outlined in the Shenzhen Declaration.

XIX IBC 2017 at Night

Wednesday, July 12, 2017

2017 American Libraries Association Annual Conference in Chicago, IL

I attended the 2017 American Libraries Association Annual Conference in Chicago, IL during the week of 22-26 June 2017.

BHL activities at the 2017 American Libraries Association Annual Conference
I met with staff at the Field Museum Library, Christine Giannoni and Diana Duncan. We had a chance to catch up on the latest activities of the Field on behalf of the Biodiversity Heritage Library (of which the Field is a founding member).  I also had a chance to catch up with Rusty Russell, ‎Director, Gantz Family Collections Center. Rusty, previously Head of Collections, U.S. National Herbarium (Smithsonian Institution), has been a long-time supporter of the BHL and one of the main drivers behind the Smithsonian's Field Book Project. Rusty also gave a personal tour of the Field's spectacular new exhibition, "Specimens: Unlocking the Secrets of Life" which provides wonderful context to the importance of natural history collections.

Russel (left) & Kalfatovic (right)

Esquivel (left) & Rehbein (right)
A highlight of the Conference was visiting the ALA Poster Sessions and talking with the BHL National Digital Stewardship Residents who presented a poster, "Improving Access to the Biodiversity Heritage Library: Halfway Remarks by National Digital Stewardship Residents" on 25 June. Ariadne Rehbein (based at the Missouri Botanical Garden) and Alicia Esquivel (Chicago Botanic Garden) presented the poster on behalf of their fellow NDSR residents (Marissa Kings, Natural History Museum of Los Angeles County; Pamela McClanahan, Smithsonian Libraries; and Katie Mika, Ernst Mayr Library at Harvard University’s Museum of Comparative Zoology). NDSR mentor, Leora Siegel, Senior Director, Lenhardt Library at the Chicago Botanic Garden also dropped by the poster session. Read more about the Residents in Chicago at BHL NDSR at ALA.

OCLC 50th Anniversary Celebration
Attending the OCLC 50th Anniversary Celebration in the spectacular setting of the Adler Planetarium provided an excellent opportunity to speak with colleagues from around the country as well as senior OCLC staff.

Internet Archive at ALA
I also attended a session organized by the Internet Archive to hear the team discuss OpenLibraries -- a project that will enable every US library to become a more digital library. The goal is to work with library partners and organizations to bring 4 million books online, through purchase or digitization, starting with the century of books missing from our digital shelves. The plan includes at-scale circulation of these e-books, enabling libraries owning the physical works to lend digital copies to their patrons. This will enable thousands of libraries to unlock their analog collections for a new generation of learners, enabling free, long-term, public access to knowledge. I also had a chance after the session to catch up with long-time BHL supporter Brewster Kahle and Wendy Hanamura (Director of Partnerships at the Internet Archive and lead for the Internet Archives' partnership as a BHL Affiliate).

Hanamura (left) & Kahle (right)

LITA Imagineering: Generation Gap: Science Fiction and Fantasy Authors Look at Youth and Technology
The LITA Imagineering Interest Group and Tor Books brought together a great panel of  Science Fiction and Fantasy authors to discuss how their work can help explain and bridge the interests of generational gaps. Participating in the panel were Cory Doctorow, Annalee Newitz, V.E. Schwab, and Susan Dennard.

OCLC Research Partners Update
This session, led by Rachel L. Frick (Executive Director, OCLC Research Partners), provided an overall update of partnership and some forthcoming activities.

The Update also focused on the following two projects:

"Public Libraries & Wikipedia" was delivered by Monika Sengul-Jones OCLC Wikipedian-in-Residence and Sharon Streams, OCLC Research/WebJunction (see more information at: "Wikipedia for Libraries: Preview the Possibilities, Discover the Opportunities")

Of particular interest was the presentation by Kenning Arlitsch (Montana State University) and Jeff Mixter (OCLC Research) on the Repository Analytics and Metrics Portal (RAMP) project. The RAMP web service represents a dramatic improvement in web analytics. The researchers have demonstrated that page-tagging analytics methods, such as Google Analytics, typically undercount item downloads from IR because they are not designed to measure non-HTML file downloads, while log file analytics typically over-count due to enormous robot traffic. (See related article, "RAMP – the Repository Analytics and Metrics Portal: A prototype web service that accurately counts item downloads from institutional repositories".