Showing posts with label CNI2014S. Show all posts
Showing posts with label CNI2014S. Show all posts

Tuesday, April 01, 2014

#CNI14S closing plenary by Dr. Donald Lindbert, "Computers, Plans, and Campfires"

Closing Plenary: Computers, Plans, and Campfires
Donald Lindberg, Director, National Library of Medicine

NOTES
Dr. Lindberg gave an excellent overview of his career up to his life at NLM (1984) and then his work at NLM from then forward. Outlining some of his key achievements, he felt that the idea of building on his predecessors work by creating a long term plan that would integrate much of the earlier work done in computing.

Some of the career highlights Dr. Lindberg reviewed included:

ANATOMICAL IMAGING
Other key areas including how to fully integrate early work on imaging. First project that came of out this was the Visible Human Project. The Visible Male was launched in 1994 (15GB); Visible Female a year later (1995; 40GB). As the project advanced, it was a good model of public/private partnerships as they developed hardware solutions to the data processing.

NCBI
Another seminal project was the creation of NCBI which put NLM in the forefront of biomedical/technology informatics. NCBI was a challenge to get through the legislative process and much credit goes to Rep. Claude Pepper (FL), but with much help from many others, singed into law by Pres. Reagan in 19988 with $8M/12FTE at start. GenBank originally built at Los Alamos National Tab, transfered to NLM in 1992.

Unified Medical Language System (UMLS)
Attempt to overcame linguistic barriers to health professionals could exchange concepts. Built around semantic types (body parts, disease, symptom) and relationships (treats, causes, prevents, part of, etc.). Ended up with 135 semantic types and 51 relationships at start. Today, nearly 3M concepts and 9M terms.

High-Performance Computing Act 1991 and the HPCC NCO (National Coordination Office)
Goals include extend US tech leadership; apply and disseminate technologies, and provide key parts for the National Information Infrastructure (the Information Superhighway).  One of the things that came out of this included Mosaic (funded at UIUC by HPCC). Technical goals were gigabit transmission speed and petaflops computational speed. 

In consultation with supercomputer hardware manufacturers they learned hardware was going well, but what was really needed was better software. Software people didn't feel there was there was a market for software, so HPCC needed to step in.

HPCC also setup the HPCC Gigabit Testbed Sites for high speed networking. This work, led by Bob Kahn (BBN) and funded by NSF and ARPA

How did the Internet change NLM?
  • Free Medline
  • Sending full-text medical articles
  • operate large data files like GenBank
  • Led to MedlinePlus for patients
  • Outreach to underserved populations
Conclusion
Libraries are still powerful enough to aid Nobel Prize winners, or at least they try

ABSTRACT
Thirty years ago, the modern digital computer was barely functional. With much huffing and puffing, NLM’s Honeywell machines, with their 3/4 inch tapes, could create citation records of the published papers from the 100 best medical journals in 1971. Later IBM 370 computers expanded the scope. This was widely regarded as a notable and highly useful feat. Yet in 1984 the Library was still buying Wang typescript processing machines for its front office, and one our finest researchers in his university lab was (very cleverly) using fluid computing logic to analyze human cardiac blood flow.

The question for NLM, what to do henceforth was answered by a 25 year Long Range Plan that has guided us well. The plan was bottom-up and largely written by those we wished to serve.

1993 brought an opportunity to help medicine and healthcare join the concept of a national commitment to high performance computing and a vast and fast national communications network. I served as Director of the National Coordination Office for this sparkling new inter-agency White House project. The resultant working Internet, in its turn, radically changed many responsibilities and empowered many efforts at NLM and other medical entities.

Prominent among these were our efforts to provide medical and scientific information directly to patients, families, and the public. Underserved populations got special attention. Recently NLM has made an exhibition of more than 150 personal on site video interviews with American Indian, native Hawaiian and native Alaskans. These experiences have greatly enhanced our understanding of the worthiness of people and the limitations of computers and information alone.

Time to switch gears (and avatars) from #CNI14S to @BioDivLibrary #BHLTechMtg

2014.04.02 BHL STLThe dodo switches look just a bit ... looking forward to some productive time with the BHL Tech Team and the Technical Advisory Group over the next few days.

"Supporting And Encouraging Digital Scholarship" presentations from Notre Dame and University of Miami at #CNI14S

Supporting And Encouraging Digital Scholarship

Zheng (John) Wang
Associate University Librarian, Digital Access, Resources and Information Technology
University of Notre Dame

Tracy Bergstrom
Program Co-Director, Digital Initiatives and Scholarship
University of Notre Dame

Mitsunori Ogihara
Associate Dean for Digital Library Innovation
University of Miami



NOTES Notre Dame Presentation
UND stated their Center after others so they had models. Impetus at UND came from faculty question that we outside of the usual box, but which called on skill sets that librarians have or should have.

Senior faculty have set methodologies that may not meld with contemporary method of digital scholarship. Me faculty are transitional and focused on tenure. So, UND works with grad students to give them grounding in the technology for the future.

Timeline
  • Funding in summer of 2012
  • Soft launch summer 2013
  • Official launch in February 2014
Strategies
  • Increased call in library job announcements for these skill sets, so find staff
  • Form partnerships with other university units
Plan
  • Environmental scan of what's in place
  • Created a physical place in former reference room space
  • Created a web presence
Services offered:
Some of these were skill sets in place at the library, others had to be developed or hired for.


Staffing chart of the 9 staff, recruiting for copyright librarian:


Meeting rooms and conference rooms key part of the 4600 saute for facility.

Did a massive PR campaign on campus. Open house event had lots of faculty participation. Also did discipline specific open houses. Humanities participation higher than science, engineering in between.

Humanities inquiries:



Challenges include:
  • Pending funding, but part of capital campaign
  • Reaching faculty at the start of projects
  • Prioritization
  • Shift public services element to wider reference staff team
  • Support digital media production

NOTES University of Miami presentation
At Miami, came about through discussions with School of Arts and Sciences. Ogihara spend about 1/3 of time on the center. He is sole staff person.

Focus of Center is on digital humanities. Challenges are both technical and political. Systemic issues related to the humanities are also a challenge.



ABSTRACTS
Reflections on a Digital Scholarship Center, Year One (Wang, Bergstrom)
Notre Dame’s Center for Digital Scholarship, constructed and launched in 2013 with funding from the university president, advances the vision of the University of Notre Dame to redefine and transform library services and spaces for the 21st century. Looking at digital scholarship centers at peer institutions and in consideration of local unique needs, the new center emphasizes services that augment digital fluency and can be sustained in the long-term by the Libraries. Constructed simultaneous to a comprehensive library reorganization, Center staff are a combination of repurposed personnel, strategic new hires, and a CLIR postdoctoral fellow. Through strategic marketing and significant outreach to faculty, the center has successfully attracted attention and continued funding. This session will cover the achievements and challenges of year one within a digital scholarship center, including funding strategies, staff models, the service portfolio, and productive collaborations across campus as well as difficulties with project selection and establishing sustainable services. The session is intended to facilitate a conversation on the extension of libraries’ missions in knowledge creation, dissemination, and preservation via digital scholarship centers.
http://library.nd.edu/cds/

Jump-starting Digital Humanities (Ogihara)
At the University of Miami in the College of Arts and Sciences and in the Otto G. Richter Library, an effort to promote digital humanities is underway, and a new associate dean position was created for the purpose. For the past two years the new dean has been collaborating with humanities and library faculty members to develop new research programs in digital humanities. Efforts so far include: software development for the Cuban Theater Digital Archive, text mining of Thomas Carlyle letters, text mining of Horace and Virgil, and optical character recognition (OCR) correction for handwritten Latin texts. This presentation will introduce these research projects and discuss future plan.
http://www.as.miami.edu/news/feature-stories/mining-new-discoveries-with-digital-humanities.html